Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs2762962 chr11:34985446 C/T 6.44E-5 257 20.17 29.88 33.2 KM Plot
SARC rs2861357 chr2:70303218 G/T 8.47E-5 258 13.77 32.88 32.4 KM Plot
SARC rs28695408 chr15:81302424 T/C 9.64E-6 257 31.42 34.83 7.82 KM Plot
SARC rs28718527 chr21:30360804 T/A 2.99E-5 254 32.18 33.77 10.87 KM Plot
SARC rs2896906 chr16:4647417 T/C 7.66E-5 252 30.32 37.63 16.17 KM Plot
SARC rs2901933 chr2:70240336 C/T 4.75E-8 254 32.78 31.93 10.72 KM Plot
SARC rs2901934 chr2:70240456 C/T 4.75E-8 254 32.78 31.93 10.72 KM Plot
SARC rs2915181 chr11:34971059 T/C 6.29E-5 254 20.17 29.88 33.48 KM Plot
SARC rs2915227 chr11:34975067 C/G 3.92E-5 258 35.27 29.62 20.17 KM Plot
SARC rs2920133 chr1:182451686 G/A 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs2920134 chr1:182451816 T/C 1.54E-7 258 31.1 34.88 6.72 KM Plot
SARC rs295599 chr11:55466311 T/C 5.18E-8 250 35.97 25.77 13.4 KM Plot
SARC rs2956100 chr11:34978249 G/A 5.84E-5 253 20.17 29.9 34.47 KM Plot
SARC rs2956102 chr11:34970817 T/C 6.29E-5 254 20.17 29.88 33.48 KM Plot
SARC rs2985401 chr11:34978096 T/C 6.84E-5 256 20.17 29.88 33.48 KM Plot